2003 Emperor's Cup

• Hannan University 2-0 紀北蹴球団
• 市立船橋高校 1-0 Thespa Kusatsu
• Kanazawa 4-1 Yamaguchi Teachers
• Sanfrecce Hiroshima 1-0 Kwansei Gakuin University
• Omiya Ardija 5-0 Matsuzaka University
• Tochigi 5-2 青森山田高校
• Avispa Fukuoka 7-0 Tokai University
• マルヤス工業 1-0 Kibi International University
• Okinawa Kariyushi 1-0 Sagan Tosu
• ALO's Hokuriku 3-2 Doto University
• Consadole Sapporo 8-0 尽誠学園高校
• Shizuoka Sangyo University 4-2 野洲高校
• Montedio Yamagata 4-3 岐阜工業高校
• Ritsumeikan University 4-1 鶴岡東高校
• Honda FC 5-0 韮崎アストロス
• Tsukuba University 5-0 松商学園高校
• Otsuka Pharmaceuticals 5-0 Iwami
• TDK 3-1 Alouette Kumamoto
• Kawasaki Frontale 2-0 Juntendo University
• 国見高校 4-0 三洋電機徳島
• Mito HollyHock 1-0 Sanfrecce Hiroshima Youth
• Tottori 1-0 Nippon Bunri University
• Shonan Bellmare 6-1 Tenri University
• Ehime 4-1 JAPANサッカーカレッジ
• Yokohama 8-1 ノーザンピークス郡山
• Fukuoka University of Education 1-1(PK 6-5) Sony Sendai
• Ventforet Kofu 3-0 Fukui University of Technology
• Momoyama Gakuin University 6-1 サン宮崎FC
• Albirex Niigata 5-0 ヴォルカ鹿児島
• Kochi University 3-1 盛岡ゼブラ
• ホンダルミノッソ狭山 1-0 Komazawa University
• Sagawa Express Tokyo 4-0 Kyushu Inax

• 市立船橋高校 1-0 Hannan University
• Kawasaki Frontale 7-1 国見高校
• Honda FC 2-1 Tsukuba University
• Avispa Fukuoka 3-0 マルヤス工業
• Yokohama 5-0 Fukuoka University of Education
• Albirex Niigata 2-0 Kochi University
• Omiya Ardija 4-0 Tochigi
• Shonan Bellmare 2-1 Ehime
• Mito HollyHock 4-1 Tottori
• Sanfrecce Hiroshima 3-0 Kanazawa
• ALO's Hokuriku 2-1 Okinawa Kariyushi
• Consadole Sapporo 3-2 Shizuoka Sangyo University
• Montedio Yamagata 6-1 Ritsumeikan University
• Sagawa Express Tokyo 2-1 ホンダルミノッソ狭山
• Otsuka Pharmaceuticals 6-0 TDK
• Ventforet Kofu 2-1 Momoyama Gakuin University

• Yokohama F. Marinos 2-2(PK 4-1) 市立船橋高校
• Gamba Osaka 3-1 Consadole Sapporo
• Júbilo Iwata 2-0 Sagawa Express Tokyo
• Tokyo Verdy 2-1 Ventforet Kofu
• Cerezo Osaka 4-1 ALO's Hokuriku
• Nagoya Grampus Eight 1-0Yokohama
• Kashiwa Reysol 1-0 Omiya Ardija
• Sanfrecce Hiroshima 2-0 Kyoto Purple Sanga
• Shimizu S-Pulse 2-0 Mito HollyHock
• Kashima Antlers 3-2 Avispa Fukuoka
• Kawasaki Frontale 3-0 Oita Trinita
• Albirex Niigata 2-1 Vegalta Sendai
• JEF United Ichihara 5-0 Otsuka Pharmaceuticals
• Shonan Bellmare 2-1 Urawa Red Diamonds
• Vissel Kobe 3-0 Montedio Yamagata
• Tokyo 2-2 Honda FC

• Kashima Antlers 3-2 Kashiwa Reysol
• Yokohama F. Marinos 2-1 Sanfrecce Hiroshima
• JEF United Ichihara 5-0 Kawasaki Frontale
• Júbilo Iwata 4-0 Albirex Niigata
• Cerezo Osaka 3-2 Gamba Osaka
• Shimizu S-Pulse 2-1 Shonan Bellmare
• Vissel Kobe 2-2(PK 5-4)Tokyo
• Tokyo Verdy 1-0 Nagoya Grampus Eight

• Kashima Antlers 4-1 Yokohama F. Marinos
• Shimizu S-Pulse 1-0 JEF United Ichihara
• Cerezo Osaka 3-2 Vissel Kobe
• Júbilo Iwata 3-0 Tokyo Verdy

• Júbilo Iwata 4-2 Shimizu S-Pulse
• Cerezo Osaka 2-1 Kashima Antlers

• Júbilo Iwata 1-0 Cerezo Osaka

Júbilo Iwata won the championship and guaranteed a place in the 2004 AFC Champions League after Kyoto Purple Sanga were relegated to Division 2.