Lachnospiraceae

Lachnospiraceae
Scientific classification
Domain:	Bacteria
Phylum:	"Firmicutes"
Class:	Clostridia
Order:	Lachnospirales
Family:	Lachnospiraceae; Rainey 2010[1]
Genera[2]
	Abyssivirga[3]; Acetatifactor; Acetitomaculum[4]; Agathobacter[5]; Anaerostipes[4]; Butyrivibrio[4]; Catonella[4]; Cellulosilyticum; Coprococcus[4]; Cuneatibacter[6]; Dorea; Eisenbergiella[7]; Faecalicatena[8]; Faecalimonas[9]; Hespellia; Johnsonella[4]; Lachnoanaerobaculum; Lachnobacterium[4]; Lachnospira[4]; Marvinbryantia; Mobilitalea[10]; Moryella; Oribacterium[4]; Parasporobacterium; Pseudobutyrivibrio[4]; Robinsoniella; Roseburia[4]; Shuttleworthia[4]; Sporobacterium[4]; Stomatobaculum; Syntrophococcus

The Lachnospiraceae are a family of anaerobic, spore-forming bacteria in the order Clostridiales that ferment diverse plant polysaccharides[11] to short-chain fatty acids (butyrate, acetate) and alcohols (ethanol). These bacteria are among the most abundant taxa in the rumen[12] and the human gut microbiota.[4][13][14][15] Members of this family may protect against colon cancer in humans by producing butyric acid.[16][17] Lachnospiraceae have been found to cause diabetes in germ-free mice.[18]

References

LPSN lpsn.dsmz.de
"List of genera included in families - Lachnospiraceae". List of Prokaryotic Names with Standing in Nomenclature. Retrieved 26 June 2016.
"Abyssivirga". www.uniprot.org.
eol
"Agathobacter". www.uniprot.org.
"Cuneatibacter". www.uniprot.org.
Parker, Charles Thomas; Garrity, George M (1 January 2003). "Taxonomic Abstract for the genera". The NamesforLife Abstracts. doi:10.1601/tx.25197.
Parker, Charles Thomas; Garrity, George M (2017). "Nomenclature Abstract for Faecalicatena Sakamoto et al. 2016". The NamesforLife Abstracts. doi:10.1601/nm.29879.
Parker, Charles Thomas; Garrity, George M (2017). "Nomenclature Abstract for Faecalimonas Sakamoto et al. 2016". The NamesforLife Abstracts. doi:10.1601/nm.29877.
UniProt
Boutard, M; Cerisy, T (13 November 2014). "Functional Diversity of Carbohydrate-Active Enzymes Enabling a Bacterium to Ferment Plant Biomass". PLOS Genetics. 10 (11): e1004773. doi:10.1371/journal.pgen.1004773. PMC 4230839. PMID 25393313.
Seshadri, R; Leahy, SC (19 March 2018). "Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection". Nature Biotechnology. 36 (4): 359–367. doi:10.1038/nbt.4110. PMC 6118326. PMID 29553575.
Phyllis Kanki; Darrell Jay Grimes, eds. (2013). Infectious diseases selected entries from the Encyclopedia of sustainability science and technology. New York: Springer. ISBN 978-1-4614-5719-0.
UniProt
Paul De Vos; et al., eds. (2009). Bergey's manual of systematic bacteriology (2nd ed.). Dordrecht: Springer. ISBN 978-0-387-68489-5.
Meehan, C. J.; Beiko, R. G. (12 March 2014). "A Phylogenomic View of Ecological Specialization in the Lachnospiraceae, a Family of Digestive Tract-Associated Bacteria". Genome Biology and Evolution. 6 (3): 703–713. doi:10.1093/gbe/evu050. PMC 3971600. PMID 24625961.
Xia, Li C.; Liu, Gang; Gao, Yingxin; Li, Xiaoxin; Pan, Hongfei; Ai, Dongmei (2019). "Identifying Gut Microbiota Associated With Colorectal Cancer Using a Zero-Inflated Lognormal Model". Frontiers in Microbiology. 10: 826. doi:10.3389/fmicb.2019.00826. ISSN 1664-302X. PMC 6491826. PMID 31068913.
Kameyama, Keishi; Itoh, Kikuji (2014). "Intestinal Colonization by a Lachnospiraceae Bacterium Contributes to the Development of Diabetes in Obese Mice". Microbes and Environments. 29 (4): 427–430. doi:10.1264/jsme2.ME14054. ISSN 1342-6311. PMC 4262368. PMID 25283478.

Newton, R. J.; VandeWalle, J. L.; Borchardt, M. A.; Gorelick, M. H.; McLellan, S. L. (29 July 2011). "Lachnospiraceae and Bacteroidales Alternative Fecal Indicators Reveal Chronic Human Sewage Contamination in an Urban Harbor". Applied and Environmental Microbiology. 77 (19): 6972–6981. doi:10.1128/AEM.05480-11. PMC 3187108. PMID 21803887.
Kameyama, Keishi; Itoh, Kikuji (2014). "Intestinal Colonization by a Lachnospiraceae Bacterium Contributes to the Development of Diabetes in Obese Mice". Microbes and Environments. 29 (4): 427–430. doi:10.1264/jsme2.ME14054. PMC 4262368. PMID 25283478.
Paul De Vos; et al., eds. (2009). Bergey's manual of systematic bacteriology (2nd ed.). Dordrecht: Springer. ISBN 978-0-387-68489-5.
Almeida, edited by Susan S. Cho, Nelson (2012). Dietary fiber and health. Boca Raton: CRC Press. ISBN 978-1-4398-9929-8.CS1 maint: extra text: authors list (link)
Olsen, LeighAnne; Choffnes, Eileen R.; Academies, Alison Mack, rapporteurs ; Forum on Microbial Threats, Board on Global Health, Institute of Medicine of the National (2012). The social biology of microbial communities : workshop summary. Washington, D.C.: National Academies Press. ISBN 978-0-309-26432-7.
Nelson, Karen E.; Peterson, editor ; foreword by Jane L.; Garges, Susan (2011). Metagenomics of the human body. New York: Springer. ISBN 978-1-4419-7089-3.CS1 maint: extra text: authors list (link)

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[1] LPSN lpsn.dsmz.de

[2] "List of genera included in families - Lachnospiraceae". List of Prokaryotic Names with Standing in Nomenclature. Retrieved 26 June 2016.

[3] "Abyssivirga". www.uniprot.org.

[eol-4] eol

[5] "Agathobacter". www.uniprot.org.

[6] "Cuneatibacter". www.uniprot.org.

[7] Parker, Charles Thomas; Garrity, George M (1 January 2003). "Taxonomic Abstract for the genera". The NamesforLife Abstracts. doi:10.1601/tx.25197.

[8] Parker, Charles Thomas; Garrity, George M (2017). "Nomenclature Abstract for Faecalicatena Sakamoto et al. 2016". The NamesforLife Abstracts. doi:10.1601/nm.29879.

[9] Parker, Charles Thomas; Garrity, George M (2017). "Nomenclature Abstract for Faecalimonas Sakamoto et al. 2016". The NamesforLife Abstracts. doi:10.1601/nm.29877.

[10] UniProt

[11] Boutard, M; Cerisy, T (13 November 2014). "Functional Diversity of Carbohydrate-Active Enzymes Enabling a Bacterium to Ferment Plant Biomass". PLOS Genetics. 10 (11): e1004773. doi:10.1371/journal.pgen.1004773. PMC 4230839. PMID 25393313.

[12] Seshadri, R; Leahy, SC (19 March 2018). "Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection". Nature Biotechnology. 36 (4): 359–367. doi:10.1038/nbt.4110. PMC 6118326. PMID 29553575.

[13] Phyllis Kanki; Darrell Jay Grimes, eds. (2013). Infectious diseases selected entries from the Encyclopedia of sustainability science and technology. New York: Springer. ISBN 978-1-4614-5719-0.

[14] UniProt

[Bergey-15] Paul De Vos; et al., eds. (2009). Bergey's manual of systematic bacteriology (2nd ed.). Dordrecht: Springer. ISBN 978-0-387-68489-5.

[16] Meehan, C. J.; Beiko, R. G. (12 March 2014). "A Phylogenomic View of Ecological Specialization in the Lachnospiraceae, a Family of Digestive Tract-Associated Bacteria". Genome Biology and Evolution. 6 (3): 703–713. doi:10.1093/gbe/evu050. PMC 3971600. PMID 24625961.

[17] Xia, Li C.; Liu, Gang; Gao, Yingxin; Li, Xiaoxin; Pan, Hongfei; Ai, Dongmei (2019). "Identifying Gut Microbiota Associated With Colorectal Cancer Using a Zero-Inflated Lognormal Model". Frontiers in Microbiology. 10: 826. doi:10.3389/fmicb.2019.00826. ISSN 1664-302X. PMC 6491826. PMID 31068913.

[KameyamaItoh2014-18] Kameyama, Keishi; Itoh, Kikuji (2014). "Intestinal Colonization by a Lachnospiraceae Bacterium Contributes to the Development of Diabetes in Obese Mice". Microbes and Environments. 29 (4): 427–430. doi:10.1264/jsme2.ME14054. ISSN 1342-6311. PMC 4262368. PMID 25283478.

Lachnospiraceae

References

Further reading