Computational Biology Department

The Computational Biology Department (CBD) is a division within the School of Computer Science at Carnegie Mellon University in Pittsburgh, Pennsylvania, United States. It is located in the Gates-Hillman Center.

Computational Biology Department
TypePrivate
Established2007 (as Lane Center for Computational Biology)
Location
Pittsburgh, Pennsylvania
CampusUrban
Websitehttp://www.cbd.cmu.edu/

Established in 2007 by Robert F. Murphy as the Lane Center for Computational Biology with funding from Raymond J. Lane and Stephanie Lane,[1] CBD became a department within the School of Computer Science in 2016.[2]

CBD faculty and students conduct research in genomics,[3][4] systems biology,[5] and biological imaging.[6][7] Its faculty have served as president of the National Science Foundation,[8] president of the International Society of Advanced Cytometry,[9] and as a member of the National Institutes of Health Council of Councils;[10] they have won the Overton Prize,[11] the Okawa Award,[12] a United States Air Force Young Investigator Award,[13] and a Presidential Young Investigator Award.[14]

As part of the HHMI-NIBIB Interfaces Initiative,[15] CBD received funding from Howard Hughes Medical Institute[16] and the National Institute of Biomedical Imaging and Bioengineering (NIBIB)[17] to develop an interdisciplinary Ph.D. program in computational biology with the University of Pittsburgh, which was founded as the Joint CMU-Pitt Ph.D. Program in Computational Biology in 2005.[18] This program is currently receiving training support through a National Institutes of Health T32 Training Grant.[19]

Notable faculty[20]

Notable meetings hosted
  • RECOMB 2014[21]
  • Great Lakes Bioinformatics Conference 2013 (joint with University of Pittsburgh)[22]
  • Automated Personal Genome Analysis (APGA) 2013[23]
  • Bioimage Informatics 2010[24]

Degree programs

References
  1. (CMU), Carnegie Mellon University. "Sept. 20: Carnegie Mellon Establishes Ray and Stephanie Lane Center for Computational Biology - Carnegie Mellon University". www.cmu.edu. Retrieved 2016-03-14.
  2. (CMU), Carnegie Mellon University. "Sept. 22: Computational Biology Becomes Department in Carnegie Mellon's School of Computer Science - Carnegie Mellon University". www.cmu.edu. Retrieved 2016-03-14.
  3. "Computational Method Dramatically Speeds Up Estimates Of Gene Expression, CMU, UMD Researchers Report | Carnegie Mellon School of Computer Science". www.cs.cmu.edu. Retrieved 2016-03-15.
  4. Patro, Rob; Mount, Stephen M.; Kingsford, Carl (2014-05-01). "Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms". Nature Biotechnology. 32 (5): 462–464. arXiv:1308.3700. doi:10.1038/nbt.2862. ISSN 1087-0156. PMC 4077321. PMID 24752080.
  5. Kanfi, Yariv; Naiman, Shoshana; Amir, Gail; Peshti, Victoria; Zinman, Guy; Nahum, Liat; Bar-Joseph, Ziv; Cohen, Haim Y. (March 2012). "The sirtuin SIRT6 regulates lifespan in male mice". Nature. 483 (7388): 218–221. Bibcode:2012Natur.483..218K. doi:10.1038/nature10815. PMID 22367546.
  6. Naik, Armaghan W.; Kangas, Joshua D.; Sullivan, Devin P.; Murphy, Robert F. (2016-02-03). "Active machine learning-driven experimentation to determine compound effects on protein patterns". eLife. 5: e10047. doi:10.7554/eLife.10047. PMC 4798950. PMID 26840049.
  7. "Scientists' Robotically Driven System Could Reduce Cost of Discovering Drug and Target Interactions | Carnegie Mellon School of Computer Science". www.cs.cmu.edu. Retrieved 2016-03-15.
  8. "Subra Suresh Biography". www.nsf.gov. Retrieved 2016-03-15.
  9. "Past Presidents - ISAC-NET". isac-net.org. Archived from the original on 2016-03-06. Retrieved 2016-03-29.
  10. "Murphy Appointed to NIH Council of Councils | Carnegie Mellon School of Computer Science". www.cs.cmu.edu. Retrieved 2016-03-29.
  11. "2012 Overton Prize: Ziv Bar-Joseph". www.iscb.org. Retrieved 2016-03-15.
  12. "Carbonell Wins Okawa Prize". www.scs.cmu.edu. Retrieved 2016-03-15.
  13. "Air Force invests more than $14M for 2010 Young Investigators Research Program". www.wpafb.af.mil. Archived from the original on 2016-04-13. Retrieved 2016-03-15.
  14. "NSF Award Search: Award#8351364 - Presidential Young Investigator Award". www.nsf.gov. Retrieved 2016-03-29.
  15. "HHMI-NIBIB Interfaces Initiative". HHMI.org. Archived from the original on 2016-03-12. Retrieved 2016-03-14.
  16. "Institute News: HHMI Awards $10 Million for Interdisciplinary Graduate Education". HHMI.org. Retrieved 2016-03-14.
  17. "NIBIB Invests in Interdisciplinary Graduate Research Training". www.nibib.nih.gov. Retrieved 2016-03-14.
  18. "Carnegie Mellon Press Release: September 6, 2005". www.cmu.edu. Archived from the original on April 9, 2016. Retrieved 2016-03-14.
  19. "Project Information - NIH RePORTER - NIH Research Portfolio Online Reporting Tools Expenditures and Results". projectreporter.nih.gov. Retrieved 2016-03-15.
  20. University, Carnegie Mellon. "Voting Faculty-Computational Biology Department - Carnegie Mellon University". cbd.cmu.edu. Archived from the original on 2015-03-08. Retrieved 2016-03-14.
  21. "RECOMB 2014 - April 2-5, Pittsburgh, Pennsylvania". murphylab.web.cmu.edu. Retrieved 2016-03-14.
  22. "HOME". www.iscb.org. Retrieved 2016-03-14.
  23. University, Carnegie Mellon. "Automated Personal Genome Analysis for Clinical Advisors: Challenges and Solutions -Computational Biology Department - Carnegie Mellon University". cbd.cmu.edu. Archived from the original on 2015-09-06. Retrieved 2016-03-29.
  24. University, Carnegie Mellon. "Bioimage Informatics 2010-Computational Biology Department - Carnegie Mellon University". cbd.cmu.edu. Archived from the original on 2015-03-30. Retrieved 2016-03-14.
  25. "Joint CMU-Pitt Ph.D. Program in Computational Biology (CPCB)". Retrieved 2018-03-06.
  26. University, Carnegie Mellon. "M.S. in Computational Biology - Carnegie Mellon University". www.cmu.edu. Retrieved 2016-03-14.
  27. "Biotechnology Innovation and Computation at Carnegie Mellon University". bic.cs.cmu.edu. Archived from the original on 2016-03-09. Retrieved 2016-03-14.
  28. "B.S. in Computational Biology | Computational Biology Department". Computational Biology Department | Carnegie Mellon University. Retrieved 2017-02-07.
  29. University, Carnegie Mellon. "Minor in Computational Biology-Computational Biology Department - Carnegie Mellon University". cbd.cmu.edu. Retrieved 2016-03-14.
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