Cryoconservation of animal genetic resources

There are several ways to collect the genetic materials based on which type of germplasm.

Freezing semen is a commonly used technique in the modern animal agriculture industry, which is well researched with established methods[22] Semen is often collected using an artificial vagina, electroejaculation, gloved-hand technique, abdominal stroking, or epididymal sperm collection. Preferred collection techniques vary based on species and available tools. Patience and technique are keys to successful collection of semen.[23] There are several styles and types of artificial vaginas that can be used depending on the breed and species of the male. During this process the penis enters a tube that is the approximate pressure and temperature of the female's vagina. There is a disposable bag inside the tube that collects the semen. During this process it may be beneficial to have a teaser animal—an animal used to sexually tease but not impregnate the animal—to increase the arousal of the male.[23] Electroejaculation is a method of semen collection in the cattle industry because it yields high quality semen. However, this process requires the animal to be trained and securely held, thus it is not ideal when working with wild or feral animals. When performing this process the electroejaculator is inserted into the rectum of the male.[24] The electroejaculator stimulates the male causing an ejaculation, after which the semen is collected. The glove hand collection technique is used mainly in the swine industry. During this process, the boar mounts a dummy, while the handler grasps the penis of the boar between the ridges of his fingers and collects the semen.[25] Abdominal stroking is exclusively used in the poultry industry. During the technique, one technician will hold the bird, while a second technician massages the bird's cloaca.[26] However, feces and semen both exit the male bird's body through the cloaca, so the semen quality is often low.[27]

Embryo collection is more demanding and requires more training than semen collection because the female reproductive organs are located inside of the body cavity. Superovulation is a technique used in order to have a female release more oocytes than normal. This can be achieved by using hormones to manipulate the female's reproductive organs. The hormones used are typically gonadotropin-like, meaning they stimulate the gonads.[28] Follicle stimulating hormone is the preferred hormone in cattle, sheep and goats. While in pigs, equine chorionic gonadotropin is preferred. However, this is not commonly done in the swine industry because gilts and sows (female pigs) naturally ovulate more than one oocyte at one time. Superovulation can be difficult because not all females will respond the same way and success will vary by species. Once the female has released the oocytes, they are fertilized internally—in vivo—and flushed out of her body. In vivo fertilization is more successful than in vitro fertilization.[29] In cattle, usually 10 or more embryos are removed from the flushing process. In order to flush the uterus, a technician will first seal off the female's cervix and add fluid, which allows the ovum to be flushed out of the uterine horns and into a cylinder for analysis. This process typically takes 30 minutes or less.[30] Technicians are able to determine the sex of the embryo, which can be especially beneficial in the dairy industry because it is more desirable for the embryo to be a female.[31] Vitrification is the preferred method of embryo freezing because it yields higher quality embryos.[32] It is crucial technicians handle the embryos with care and freeze them within 3–4 hours in order to preserve viability of the greatest percentage of embryos.[1]

Oocytes can be collected from most mammalian species. Conventional oocyte collection is when ovaries are removed from a donor animal; this is done posthumously in slaughter facilities.[33] The ovaries are kept warm as they are brought back to a laboratory for oocyte collection. Keeping the ovaries warm helps increase the success rate of fertilization.[33] Once collected the oocytes are assessed and categorized into small, medium, and large, and then matured for 20–23 hours.[34] This simple, inexpensive technique can lead to about 24 oocytes collected from a bovine. Conventional oocyte collection is especially useful for females who unexpectedly die or who are incapable of being bred due to injury. A second option for oocyte collection is to utilize the transvaginal ultrasound guided oocyte collection method otherwise known as TUGA. Collection technique varies slightly by species, but the general methods for collection are the same; a needle is inserted into each ovarian follicle and pulled out via vacuum. The major benefit of using this method is the ability to expand the lifetime reproductive productivity, or the number of productive days an animal is in her estrous cycle. Pregnant cows and mares continue to develop new follicles until the middle of pregnancy. Thus, TUGA can be used to substantially increase the fitness of an individual because the female then has the potential produce more than one offspring per gestation.[35]

Somatic cells are an additional resource which can be retrieved for gene banking, particularly in the cases of emergency wherein gametes cannot be collected or stored. Tissues can be taken from living animals or shortly after death. These tissues can be saved via cryopreservation or dehydrated. Blood cells can also be useful for DNA analysis such as comparing homozygosity[36][37] It is recommended by the FAO that two vials of blood be drawn to reduce the chance that all samples will be lost from a particular animal. DNA can be extracted using commercial kits, making this an affordable and accessible strategy for collecting germplasms.[1]

There are two cryopreservation freezing methods: slow freezing and vitrification.

Example freezing laboratory

During slow freezing, cells are placed in a medium which is cooled below the freezing point using liquid nitrogen. This causes an ice mass to form in the medium. As the water in the medium freezes, the concentration of the sugars, salts, and cryoprotectant increase. Due to osmosis, the water from the cells enters the medium to keep the concentrations of sugars, salts, and cryoprotectant equal. The water that leaves the cells is eventually frozen, causing more water to diffuse out of the cell. Eventually, the unfrozen portion—cellular—becomes too viscous for ice crystals to form inside of the cell.[1]

The second technique for cryoconservation is vitrification or flash freezing. Vitrification is the transformation from a liquid to solid state without the formation of crystals. The process and mechanics of vitrification are similar to slow freezing, the difference lying in the concentration of the medium. The vitrification method applies a selected medium which has a higher concentration of solute so the water will leave the cells via osmosis. The medium is concentrated enough so all of the intracellular water will leave without the medium needing to be reconcentrated. The higher concentration of the medium in vitrification allows the germplasms to be frozen more rapidly than with slow freezing. Vitrification is considered to be the more effective technique of freezing germplasms.[16]

Example of animal holding and collecting facility

When designing a facility, there are several things that should be kept in mind including biosecurity, worker safety and efficiency, and animal welfare. Diverse infrastructure is required in order to successfully collect and store genetic material. The buildings needed depend on the size of facilities as well as the extent of the operations.[1]

Biosecurity, a management measure used to prevent the transmission of diseases and disease agents on the facility, is important to keep in mind when designing a facility.[38] In order to achieve a high level of biosecurity, collection facilities should be placed as far as possible from one another, as well as from farms. According to the FAO's recommendations, facilities should be "at least 3 km from farms or other biological risks and 1 km from main roads and railways".[1] Separation between collection facilities and surrounding farms can improve biosecurity as pests, such as flies and mice, have the potential to travel from farm to facility and vice versa. Other disease agents may be able to travel through the air via wind, furthering the importance of separation of farms and proper air sanitation and ventilation. Additionally, a perimeter fence is used to prevent potential threats that could cause contamination to germplasms, such as unauthorized personnel or unwanted animals, from entering the facilities. Animals may be housed in pens located inside or outside of a barn as long as they are contained within the perimeter fence. When interaction with outside objects, such as feed trucks or veterinary personnel, is necessary, complete sanitation is required to decrease the risk of contamination. There is always the possibility of disease spreading among the animals whose biological data is being collected or from animal to human. An example of a disease that can easily spread through germplasm is Porcine Reproductive and Respiratory Syndrome, otherwise known as PRRS. A highly contagious disease between swine, PRRS causes millions of dollars to be lost annually by producers. The disease can be spread through boar semen.[39] Therefore, biosecurity is particularly important when genetic material will be inserted into another animal to prevent the spread of such diseases.

Worker safety is always a priority when handling livestock. Escape routes and alternative access throughout the facility are crucial for both the handlers and livestock.[40] Germplasm storage and collection sites must include locker rooms for staff, which provide lockers, showers, and storage of clothing and footwear, in order to meet sanitation requirements.[1]

Animal housing practical when collecting germplasms because they keep donor animals in an easily accessible area, making the process of collecting germplasms easier and more efficient. The species and breeds of animals housed should be considered while planning the facility; facilities should be big enough to meet animal welfare standards, yet small enough to reduce human contact and increase ease of handling while reducing stress of the animal. As the process of collecting germplasm may take several days, the animal may become stressed causing a lower quality of genetic material to be obtained. Thus, training the animal to become familiar with the process is key.[40] Holding facilities for animals may also serve as a quarantine. Quarantine facilities are necessary in order to prevent the transmission of disease from animal to animal, animal to germplasm, germplasm to germplasm, and germplasm to animal. Introducing quarantine to separate the diseased animals from the healthy should be done immediately. However, a quarantine does not always prevent the spread of disease.[31]

Temperature control and ventilation should be included in the design of the holding and collection facilities to keep the animals comfortable and healthy, while limiting stress during the germplasm collection process. Ventilation serves as an effective way to keep clean airflow throughout the facilities and eliminate odors Temperature control helps regulate the air quality and humidity level inside the barn.[1]

A freezing and processing laboratory for genetic materials can be on the same site as the holding and collecting facility. However, the laboratory must have higher sanitation standards. According to the FAO, a proper germplasm laboratory should include the following.[1]

Cryopreservation requires equipment to collect biological material and test tubes for storage. Price is highly variable based on the quality of the collection and storage materials.[41] The life expectancy of tools should be considered when determining costs.[41] In addition to traditional laboratory equipment, the FAO also suggests the following: