VFDB
VFDB also known as Virulence Factor Database is a database that provides scientist quick access to virulence factors in bacterial pathogens.[1] It can be navigated and browsed using genus or words. A BLAST tool is provided for search against known virulence factors.[2] VFDB contains a collection of 16 important bacterial pathogens.[1] Perl scripts were used to extract positions and sequences of VF from GenBank.[3] Clusters of Orthologous Groups (COG) was used to update incomplete annotations.[1] More information was obtained by NCBI. VFDB was built on Linux operation systems on DELL PowerEdge 1600SC servers.
| Content | |
|---|---|
| Description | A database that tracks bacterial virulence factors |
| Data types captured | Pathogenic bacteria |
| Organisms | Bacteria |
| Contact | |
| Primary citation | PMID 15608208 |
| Access | |
| Website | www |
| Miscellaneous | |
| Bookmarkable entities | yes |
See also
References
- Chen, L. (2004-12-17). "VFDB: a reference database for bacterial virulence factors". Nucleic Acids Research. 33 (Database issue): D325–D328. doi:10.1093/nar/gki008. ISSN 1362-4962. PMC 539962. PMID 15608208.
- Altschul, S. (1997-09-01). "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs". Nucleic Acids Research. 25 (17): 3389–3402. doi:10.1093/nar/25.17.3389. ISSN 1362-4962. PMC 146917. PMID 9254694.
- Benson, D. A.; Karsch-Mizrachi, I.; Lipman, D. J.; Ostell, J.; Sayers, E. W. (2009-01-01). "GenBank". Nucleic Acids Research. 37 (Database): D26–D31. doi:10.1093/nar/gkn723. ISSN 0305-1048. PMC 2686462. PMID 18940867.
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