Pattonomys

Pattonomys is a genus of rodent in the family Echimyidae,[1] named after American mammalogist James L. Patton. It contains the following species:

Pattonomys
Scientific classification
Kingdom: Animalia
Phylum: Chordata
Class: Mammalia
Order: Rodentia
Superfamily: Octodontoidea
Family: Echimyidae
Subfamily: Echimyinae
Tribe: Echimyini
Genus: Pattonomys
Emmons, 2005 [1]
Species

Pattonomys occasius
Pattonomys semivillosus

Phylogeny

Pattonomys is the sister genus to Toromys. These taxa are closely related to Echimys, Phyllomys, and Makalata, reflecting the fact that Pattonomys occasius and Toromys grandis have formerly been placed in Makalata by some authorities.[2] In turn, these five genera share phylogenetic affinities with a clade containing the bamboo rats Dactylomys, Olallamys, Kannabateomys together with Diplomys and Santamartamys.[3]

Genus-level cladogram of the Echimyini.
root  
         
         
         
         
         
 

  Echimys

 
 

  Phyllomys

 
 
 

  Makalata

 
 
 
         

  Pattonomys

 
 

  Toromys
  (Giant tree-rat)

 
 
 
 
  "Dactylomyines"  
         
 

  Dactylomys

 
 

  Olallamys

 
 
 

  Kannabateomys
  (Atlantic bamboo rat)

 
 
 
 

  Diplomys

 
 

  Santamartamys
  (Red-crested tree-rat)

 
 
 
 
  "Eumysopines"  
 

  Lonchothrix
  (Tuft-tailed spiny tree-rat)

 
 

  Mesomys

 
 
 
 

  Isothrix

 
 
The cladogram has been reconstructed from mitochondrial and nuclear DNA characters.[4][5][6][7][8][9][10][11][3]

References
  1. Emmons, Louise Hickock (2005). "A revision of the genera of arboreal Echimyidae (Rodentia: Echimyidae, Echimyinae), with descriptions of two new genera". Mammalian Diversification: From Chromosomes to phylogeography (A Celebration of the Career of James L. Patton). 133. University of California Press. pp. 247–310. ISBN 9780520098534.
  2. Woods, C.A.; Kilpatrick, C.W. (2005). "Species Makalata occasius". In Wilson, D.E.; Reeder, D.M (eds.). Mammal Species of the World: A Taxonomic and Geographic Reference (3rd ed.). Johns Hopkins University Press. pp. 1538–1600. ISBN 978-0-8018-8221-0. OCLC 62265494.
  3. Fabre, Pierre-Henri; Upham, Nathan S.; Emmons, Louise H.; Justy, Fabienne; Leite, Yuri L. R.; Loss, Ana Carolina; Orlando, Ludovic; Tilak, Marie-Ka; Patterson, Bruce D.; Douzery, Emmanuel J. P. (2017-03-01). "Mitogenomic Phylogeny, Diversification, and Biogeography of South American Spiny Rats". Molecular Biology and Evolution. 34 (3): 613–633. doi:10.1093/molbev/msw261. ISSN 0737-4038. PMID 28025278.
  4. Lara, Márcia C.; Patton, James L.; da Silva, Maria Nazareth F. (1996). "The Simultaneous Diversification of South American Echimyid Rodents (Hystricognathi) Based on Complete Cytochrome b Sequences". Molecular Phylogenetics and Evolution. 5 (2): 403–413. doi:10.1006/mpev.1996.0035. PMID 8728398.
  5. Leite, Yuri L. R.; Patton, James L. (2002). "Evolution of South American spiny rats (Rodentia, Echimyidae): the star-phylogeny hypothesis revisited". Molecular Phylogenetics and Evolution. 25 (3): 455–464. doi:10.1016/s1055-7903(02)00279-8.
  6. Galewski, Thomas; Mauffrey, Jean-François; Leite, Yuri L. R.; Patton, James L.; Douzery, Emmanuel J. P. (2005). "Ecomorphological diversification among South American spiny rats (Rodentia; Echimyidae): a phylogenetic and chronological approach". Molecular Phylogenetics and Evolution. 34 (3): 601–615. doi:10.1016/j.ympev.2004.11.015. PMID 15683932.
  7. Upham, Nathan S.; Patterson, Bruce D. (2012). "Diversification and biogeography of the Neotropical caviomorph lineage Octodontoidea (Rodentia: Hystricognathi)". Molecular Phylogenetics and Evolution. 63 (2): 417–429. doi:10.1016/j.ympev.2012.01.020. PMID 22327013.
  8. Fabre, Pierre-Henri; Galewski, Thomas; Tilak, Marie-ka; Douzery, Emmanuel J. P. (2013-03-01). "Diversification of South American spiny rats (Echimyidae): a multigene phylogenetic approach". Zoologica Scripta. 42 (2): 117–134. doi:10.1111/j.1463-6409.2012.00572.x. ISSN 1463-6409.
  9. Loss, Ana; Moura, Raquel T.; Leite, Yuri L. R. (2014). "Unexpected phylogenetic relationships of the painted tree rat Callistomys pictus (Rodentia: Echimyidae)" (PDF). Natureza on Line. 12: 132–136.
  10. Fabre, Pierre-Henri; Vilstrup, Julia T.; Raghavan, Maanasa; Der Sarkissian, Clio; Willerslev, Eske; Douzery, Emmanuel J. P.; Orlando, Ludovic (2014-07-01). "Rodents of the Caribbean: origin and diversification of hutias unravelled by next-generation museomics". Biology Letters. 10 (7): 20140266. doi:10.1098/rsbl.2014.0266. ISSN 1744-9561. PMC 4126619. PMID 25115033.
  11. Upham, Nathan S.; Patterson, Bruce D. (2015). "Evolution of Caviomorph rodents: a complete phylogeny and timetree for living genera". In Vassallo, Aldo Ivan; Antenucci, Daniel (eds.). Biology of caviomorph rodents: diversity and evolution. Buenos Aires: SAREM Series A, Mammalogical Research — Sociedad Argentina para el Estudio de los Mamíferos. pp. 63–120.
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