FOXN1

FOXN1
Identifiers
Aliases	FOXN1, FKHL20, RONU, WHN, forkhead box N1, TIDAND, TLIND
External IDs	OMIM: 600838 MGI: 102949 HomoloGene: 2664 GeneCards: FOXN1
Gene location (Human)
Chr.	Chromosome 17 (human)[1]
End	28,538,896 bp[1]
Gene location (Mouse)
Chr.	Chromosome 11 (mouse)[2]
End	78,386,558 bp[2]
RNA expression pattern
	More reference expression data
Gene ontology
Molecular function	• sequence-specific DNA binding; • DNA binding; • GO:0001131, GO:0001151, GO:0001130, GO:0001204 DNA-binding transcription factor activity; • GO:0001077, GO:0001212, GO:0001213, GO:0001211, GO:0001205 DNA-binding transcription activator activity, RNA polymerase II-specific; • GO:0001200, GO:0001133, GO:0001201 DNA-binding transcription factor activity, RNA polymerase II-specific;
Cellular component	• cell nucleus;
Biological process	• hair follicle development; • defense response; • nail development; • regulation of transcription, DNA-templated; • blood vessel morphogenesis; • thymus epithelium morphogenesis; • thymus development; • regulation of transcription from RNA polymerase II promoter; • lymphocyte homeostasis; • positive regulation of hair follicle development; • epithelial cell proliferation; • transcription from RNA polymerase II promoter; • transcription, DNA-templated; • regulation of positive thymic T cell selection; • keratinocyte differentiation; • lymphoid lineage cell migration into thymus; • T cell homeostasis; • multicellular organism development; • regulation of T cell differentiation in thymus; • epidermis development; • animal organ morphogenesis; • regulation of gene expression; • cellular proliferation; • T cell lineage commitment; • positive regulation of epithelial cell differentiation; • cell differentiation; • positive regulation of transcription from RNA polymerase II promoter; • haematopoiesis;
	Sources:Amigo / QuickGO
Orthologs
	8456
	15218
	ENSG00000109101
	ENSMUSG00000002057
	O15353
	Q61575
	NM_003593; NM_001369369
	NM_001277290; NM_008238
	NP_003584; NP_001356298
	NP_001264219; NP_032264
	Wikidata
View/Edit Human	View/Edit Mouse

Forkhead box protein N1 is a protein that in humans is encoded by the FOXN1 gene.[5][6]

Function

Mutations in the winged-helix transcription factor gene at the nude locus in mice and rats produce the pleiotropic phenotype of hairlessness and athymia, resulting in a severely compromised immune system. This gene is orthologous to the mouse and rat genes and encodes a similar DNA-binding transcription factor that is thought to regulate keratin gene expression. A mutation in this gene has been correlated with T-cell immunodeficiency, the skin disorder congenital alopecia, and nail dystrophy. Alternative splicing in the 5' UTR of this gene has been observed.[6] In the chick embryo, the FOXN1 gene is expressed in the developing thymus, claws and feathers. The expression of FOXN1 in feathers and claws indicates that it may regulate the feather outgrowth. In feather and claws, FOXN1 can potentially regulate expression of keratins similar to mammalian orthologs. [7] In thymic epithelial cells, FOXN1 has been shown to bind to and regulate genes involved in T-cell maturation and antigen presentation.[8]

References

GRCh38: Ensembl release 89: ENSG00000109101 - Ensembl, May 2017
GRCm38: Ensembl release 89: ENSMUSG00000002057 - Ensembl, May 2017
"Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
"Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
Schorpp M, Hofmann M, Dear TN, Boehm T (Dec 1997). "Characterization of mouse and human nude genes". Immunogenetics. 46 (6): 509–15. doi:10.1007/s002510050312. PMID 9321431. S2CID 32175138.
"Entrez Gene: FOXN1 forkhead box N1".
Darnell DK, Zhang LS, Hannenhalli S, Yaklichkin SY (Dec 2014). "Developmental expression of chicken FOXN1 and putative target genes during feather development". The International Journal of Developmental Biology. 58 (1): 57–64. doi:10.1387/ijdb.130023sy. PMID 24860996.
Žuklys S, Handel A, Zhanybekova S, Govani F, Keller M, Maio S, Mayer CE, Teh HY, Hafen K, Gallone G, Barthlott T, Ponting CP, Holländer GA (Aug 2016). "Foxn1 regulates key target genes essential for T cell development in postnatal thymic epithelial cells". Nature Immunology. 17 (10): 1206–15. doi:10.1038/ni.3537. PMC 5033077. PMID 27548434.

Zhang Z, Burnley P, Coder B, Su DM (2012). "Insights on FoxN1 biological significance and usages of the "nude" mouse in studies of T-lymphopoiesis". International Journal of Biological Sciences. 8 (8): 1156–67. doi:10.7150/ijbs.5033. PMC 3477685. PMID 23091413.
Mecklenburg L, Tychsen B, Paus R (Nov 2005). "Learning from nudity: lessons from the nude phenotype". Experimental Dermatology. 14 (11): 797–810. doi:10.1111/j.1600-0625.2005.00362.x. PMID 16232301. S2CID 27700105.
Nehls M, Pfeifer D, Schorpp M, Hedrich H, Boehm T (Nov 1994). "New member of the winged-helix protein family disrupted in mouse and rat nude mutations". Nature. 372 (6501): 103–7. doi:10.1038/372103a0. PMID 7969402. S2CID 2656526.
Frank J, Pignata C, Panteleyev AA, Prowse DM, Baden H, Weiner L, Gaetaniello L, Ahmad W, Pozzi N, Cserhalmi-Friedman PB, Aita VM, Uyttendaele H, Gordon D, Ott J, Brissette JL, Christiano AM (Apr 1999). "Exposing the human nude phenotype". Nature. 398 (6727): 473–4. doi:10.1038/18997. hdl:2299/16173. PMID 10206641. S2CID 107413.
Gattenlöhner S, Müller-Hermelink HK, Marx A (1999). "Transcription of the nude gene (WHN) in human normal organs and mediastinal and pulmonary tumors". Pathology, Research and Practice. 195 (8): 571–4. doi:10.1016/s0344-0338(99)80007-7. PMID 10483588.
Schlake T, Schorpp M, Maul-Pavicic A, Malashenko AM, Boehm T (Apr 2000). "Forkhead/winged-helix transcription factor Whn regulates hair keratin gene expression: molecular analysis of the nude skin phenotype". Developmental Dynamics. 217 (4): 368–76. doi:10.1002/(SICI)1097-0177(200004)217:4<368::AID-DVDY4>3.0.CO;2-Z. PMID 10767081.
Adriani M, Martinez-Mir A, Fusco F, Busiello R, Frank J, Telese S, Matrecano E, Ursini MV, Christiano AM, Pignata C (May 2004). "Ancestral founder mutation of the nude (FOXN1) gene in congenital severe combined immunodeficiency associated with alopecia in southern Italy population". Annals of Human Genetics. 68 (Pt 3): 265–8. doi:10.1046/j.1529-8817.2004.00091.x. PMID 15180707. S2CID 20067101.
Janes SM, Ofstad TA, Campbell DH, Watt FM, Prowse DM (Aug 2004). "Transient activation of FOXN1 in keratinocytes induces a transcriptional programme that promotes terminal differentiation: contrasting roles of FOXN1 and Akt" (PDF). Journal of Cell Science. 117 (Pt 18): 4157–68. doi:10.1242/jcs.01302. PMID 15316080. S2CID 9153395.
Nonaka D, Henley JD, Chiriboga L, Yee H (Jul 2007). "Diagnostic utility of thymic epithelial markers CD205 (DEC205) and Foxn1 in thymic epithelial neoplasms". The American Journal of Surgical Pathology. 31 (7): 1038–44. doi:10.1097/PAS.0b013e31802b4917. PMID 17592270. S2CID 30502411.
Weiner L, Han R, Scicchitano BM, Li J, Hasegawa K, Grossi M, Lee D, Brissette JL (Sep 2007). "Dedicated epithelial recipient cells determine pigmentation patterns". Cell. 130 (5): 932–42. doi:10.1016/j.cell.2007.07.024. PMID 17803914. S2CID 14622851.

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[refGRCh38Ensembl-1] GRCh38: Ensembl release 89: ENSG00000109101 - Ensembl, May 2017

[refGRCm38Ensembl-2] GRCm38: Ensembl release 89: ENSMUSG00000002057 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid9321431-5] Schorpp M, Hofmann M, Dear TN, Boehm T (Dec 1997). "Characterization of mouse and human nude genes". Immunogenetics. 46 (6): 509–15. doi:10.1007/s002510050312. PMID 9321431. S2CID 32175138.

[entrez-6] "Entrez Gene: FOXN1 forkhead box N1".

[pmid_24860996-7] Darnell DK, Zhang LS, Hannenhalli S, Yaklichkin SY (Dec 2014). "Developmental expression of chicken FOXN1 and putative target genes during feather development". The International Journal of Developmental Biology. 58 (1): 57–64. doi:10.1387/ijdb.130023sy. PMID 24860996.

[pmid_27548434-8] Žuklys S, Handel A, Zhanybekova S, Govani F, Keller M, Maio S, Mayer CE, Teh HY, Hafen K, Gallone G, Barthlott T, Ponting CP, Holländer GA (Aug 2016). "Foxn1 regulates key target genes essential for T cell development in postnatal thymic epithelial cells". Nature Immunology. 17 (10): 1206–15. doi:10.1038/ni.3537. PMC 5033077. PMID 27548434.

FOXN1

Function

References

Further reading